Inferring parsimonious migration histories for metastatic cancers
Cette étude présente un algorithme (MACHINA) visant à reconstituer, à partir de données issues d'un séquençage de l'ADN des tumeurs primitives et des métastases, les trajectoires des cellules au cours du processus métastatique
Metastasis is the migration of cancerous cells from a primary tumor to other anatomical sites. Although metastasis was long thought to result from monoclonal seeding, or single cellular migrations, recent phylogenetic analyses of metastatic cancers have reported complex patterns of cellular migrations between sites, including polyclonal migrations and reseeding. However, accurate determination of migration patterns from somatic mutation data is complicated by intratumor heterogeneity and discordance between clonal lineage and cellular migration. We introduce MACHINA, a multi-objective optimization algorithm that jointly infers clonal lineages and parsimonious migration histories of metastatic cancers from DNA sequencing data. MACHINA analysis of data from multiple cancers shows that migration patterns are often not uniquely determined from sequencing data alone and that complicated migration patterns among primary tumors and metastases may be less prevalent than previously reported. MACHINA’s rigorous analysis of migration histories will aid in studies of the drivers of metastasis.
Nature Genetics , résumé, 2018